• Gaze2Segment: Integrating Eye-Tracking Technology into Medical Image Segmentation
• Development of a Novel Eye-tracker System for 3D CT and multi-modality MR Images
• A Novel Computer-Aided Diagnostic System Using Expert Radiologist’s Search Algorithm  and Deep Learning Algorithms
• Prediction of Liver Cancer Treatment Outcome Using AI
• Analysis of a Phase III Clinical Trial Results
• Immunogenic Effects of MR-HIFU in Pediatric Oncology
• Delineation of Myocardium Lesions Created by Radiofrequency Ablation Using Cardiac Magnetic Resonance Imaging
• Reverse Polarization Method for Catheter Tracking
• Catheter Tracking Using Transmit Array System
• Safe fMRI Study of Deep Brain Stimulator (DBS) Patients
• Inductively Coupled Miniaturized Birdcage Coil
• Ablation of Brain Tumors Using Iron Particles and Opposing Magnets
• Microstrip Birdcage Coil Design

• PlosOne (Academic Editor)
• Medical Physics
• Academic Radiology
• PeerJ
• International Journal of Hyperthermia
• Nature: Scientific Reports

• Languages: Python and R
• Scientific Softwares: SEMCAD, HFSS, Matlab, Mathematica
• MR Scanners: Promaxo, Philips Achieva 1.5T, Philips Sonalleve v2, GE Signa Excite 1.5T, GE Discovery 3T, Siemens TimTRIO, Siemens 8 Channel Transmit Array System for 3T
• Scientific Tools: CARTO, Network Analyzer
• Software Tools: Blender, 3D Slicer, 3DsMAX, Photoshop,

1- Celik H and Atalar E. “Magnetic Resonance Method and Apparatus to Separate Depiction of a Tracked Item From Surrounding Anatomy of a Patient, Using a Transmit Array System” U.S. Patent 20110257516, Oct. 20, 2011.

17- Lau LW, Eranki A, Celik H, Kim A, Kim P,  Yarmolenko P,  Sharma K.  “Are Current Technical Exclusion Criteria for Clinical Trials of Magnetic Resonance-Guided High-Intensity Focused Ultrasound Too Restrictive?: Early Experiences at a Pediatric Hospital”. J Ultrasound Med. 2020 Sep;39(9):1849-1855. doi: 10.1002/jum.15259. Epub 2020 Mar 30.

16- Celik H, Wakim P, Pritchard W,  Castro M, Leonard S, Karanian J, Dewhirst M, Lencioni R, Wood B. “Radiofrequency Ablation Duration per Tumor Volume May Correlate with Overall Survival in Solitary Hepatocellular Carcinoma Patients Treated with RF Ablation Plus Lyso-thermosensitive Liposomal Doxorubicin”. 2019, J Vasc Interv Radiol. Dec;30(12):1908-1914. doi: 10.1016/j.jvir.2019.04.023. Epub 2019 Aug 10

15- Stember JN, Celik H, Krupinski E, Chang PS, Mutasa S, Wood B, Lignelli A, Moonis G, Schwartz LH, Jambawalikar S. Bagci U. Eye Tracking for Deep Learning Segmentation Using Convolutional Neural Networks. 2019, Journal of Digital Imaging, doi: 10.1007/s10278-019-00220-4. May 1.

14- Khosravan N, Celik H, Turkbey B, Jones E, Bradford JW, Ulas B. “A Collaborative Computer Aided Diagnosis (C-CAD) System with Eye-Tracking, Sparse Attentional Model, and Deep Learning” 2019, Medical Image Analysis, 51, 101-115, doi.org/10.1016/j.media.2018.10.010

13- Sharma K, Yarmolenko P,  Eranki A, Partanen A,  Celik H, Kim A, Oetgen M, Kim P, “Magnetic Resonance Imaging–guided High-intensity Focused Ultrasound Applications in Pediatrics: Early Experience at Children’s National Medical Center”. 2018, Topics in Magnetic Resonance Imaging, DOI: 10.1016/j.jpeds.2017.06.046

12- Eranki A, Farr N, Partanen A, Sharma K, Rossi C, Rosenberg A, Kim A,  Oetgen M,   Celik H,  Yarmolenko P, Kim P, Wood B. “Mechanical Fractionation of Tissues using Microsecond-Long HIFU Pulses on a Clinical MR-HIFU System”. 2018, International Journal of Hyperthermia, 27(1) DOI: 10.1097/RMR.0000000000000163

11- Sharma K, Yarmolenko P,   Celik H,  Eranki A, Partanen A, Smitthimedhin A, Kim A, Oetgen M, Beskin V, Santos D, Patel J,  Kim P,  “Comparison of Noninvasive High-Intensity Focused Ultrasound with Radiofrequency Ablation of Osteoid Osteoma”. 2017, The Journal of Pediatrics, DOI: 10.1016/j.jpeds.2017.06.046

10- Buty M., Xu Z., Wu A., Gao M., Nelson C., Papadakis G. Z., Teomete U,  Celik H, Turkbey B, Choyke P, Mollura DJ, Bagci U, Folio, L. R. “Quantitative Image Quality Comparison of Reduced- and Standard-Dose Dual-Energy Multiphase Chest, Abdomen, and Pelvis CT”. 2017, Tomography, 3(2), 114–122. http://doi.org/10.18383/j.tom.2017.00002

9- Yarmolenko P, Partanen A, Eranki A, Celik H,  Kim A, Oetgen M, Beskin V, Santos D, Patel J,  Kim P, Sharma K “Technical Aspects of Osteoid Osteoma Ablation in Children Using MR-guided High Intensity Focused Ultrasound”. 2017, International Journal of Hyperthermia, DOI: 10.1080/02656736.2017.1315458

8- Khosravan N, Celik H, Turkbey B, Cheng R, McCreedy E, McAuliffe M, Bednarova S, Jones E, Chen X, Choyke PL, Bradford JW, Ulas B. “Gaze2Segment: A Pilot Study for Integrating Eye-Tracking Technology into Medical Image Segmentation” In: Müller H. et al. (eds) Medical Computer Vision and Bayesian and Graphical Models for Biomedical Imaging. BAMBI 2016, MCV 2016. Lecture Notes in Computer Science, vol 10081. Springer, Cham.  https://doi.org/10.1007/978-3-319-61188-4_9

7- Griffin GH, Anderson KJT, Celik H, Wright GA. “Safely Assessing Radiofrequency Heating Potential of Conductive Devices Using Image-Based Current Measurements”. Magn Reson Med 2015 Jan;73(1):427-41 DOI: 10.1002/mrm.25103, 2014. PMID:24452789

6 – Celik H, Ramanan V, Barry J, Ghate S, Leber V, Oduneye SO, Gu Y, Jamali M, Ghugre, Stainsby JA, Shurrab M, Crystal E, Wright GA. “Intrinsic Contrast for Characterization of Acute Radiofrequency Ablation Lesions”.Circ Arrhythm Electrophysiol 2014;7:718-727. DOI: 10.1161/CIRCEP.113.001163, 2014. PMID:24988893

5- Celik H, Mahcicek ID, Senel O, Wright GA, and Atalar E. “Tracking the Rotational Orientation and Position of a Catheter Using a Transmit Array System”. IEEE Trans Med Imaging 2013 Apr;32(4):809-17. DOI: 10.1109/TMI.2013.2247047. Epub 2013 Feb 13. PMID:15334585

4- Oduneye SO, Pop M, Biswas L, Ghate S, Flor R, Ramanan V, Barry J, Celik H, Crystal E, Wright GA. “Post-Infarction Ventricular Tachycardia Substrate Characterization: A Comparison Between Late Enhancement Magnetic Resonance Imaging And Voltage Mapping Using a MR-Guided Electrophysiology System”. IEEE Trans Biomed Eng 2013 Sep;60(9):2442-9. DOI: 10.1109/TBME.2013.2257772. Epub 2013 Apr 12. PMID:23591470

3- Celik H and Atalar E. “Reverse polarized inductive coupling to transmit and receive radiofrequency coil arrays”. Magn Reson Med 2012 Feb;67(2):446-56. DOI: 10.1002/mrm.23030. Epub 2011 Jun 7. PMID: 21656566

2- Celik H, Uluturk A, Tali T, Atalar E. “A Catheter Tracking Method Using Reversed Polarization for MR-guided Interventions”. Magn Reson Med 2007 Dec;58(6):1224-31. PMID:18046701

1- Celik H, Eryaman Y, Altintas A, Hafez IA, Atalar E. “Evaluation of Internal MRI Coils using Ultimate Intrinsic SNR”. Magn Reson Med 2004 Sep;52(3):640-9. PMID:15334585

44- Amalou H, Celik H, Varble N, Amalou A, Xu S, Harmon S, Sanford T, Brown G, Xu D, Xu Z, Roth H, Suh R, Raman S, Pinto P, Turkbey B, Wood B. “Building an Artificial Intelligence Platform in IR or Interventional Oncology”. SIR 2020, March 28 – April 02, Seattle, WA

43- Amalou A, Amalou H, Xu S, Celik H,  Turkbey B, Wood B. “Tools and Terminology for Cost Studies in IR”. SIR 2020, March 28 – April 02, Seattle, WA

42- Stember JN, Celik H, Krupinski E, Chang PS, Mutasa S, Wood B, Lignelli A, Moonis G, Schwartz LH, Jambawalikar S. Bagci U. Eye Tracking for Deep Learning Segmentation Using Convolutional Neural Networks. Society for Imaging Informatics in Medicine 2019 Annual Conference, Denver, CO, June 26-June 28, 2019

41- Celik H, Pesapane, F, Choyke PL, Pinto P, Anderson VL, Turkbey B, Wood B. “MRI and US Volume Measurement Differences May Predict Success of Prostate Fusion Biopsy”. RSNA 2018, Nov 25-30 Chicago, IL

40- Celik H, Wakim P, Karanian J, Pritchard W, Castro M, Leonard S, Borys N, Dewhirst M, Lencioni R, Wood B. “Tumor size and geometry in patients treated with radiofrequency ablation plus lyso thermosensitive liposomal doxorubicin (LTLD)”. SIR 2018, March 17-22, Los Angeles, CA

39- Amalou H, Xu S, Amalou A, Li M, Suh R, Celik H, Wood B. “Barriers to adoption of fusion and navigation tools for biopsy and ablation”. SIR 2018, March 17-22, Los Angeles, CA

38- Kim A, Sharma KV, Yarmolenko P, Celik H, Kaplan R, Dome JS, Musso L, Borys N, Partanen A, Warner L,  Kim P. “Phase 1 trial of lyso-thermosensitive liposomal doxorubicin (LTLD) and magnetic resonance guided high intensity focused ultrasound (MR-HIFU) for pediatric refractory solid tumors.”. ASCO, 2017, Chicago, IL, USA

37-  Celik H, Turkbey B, Choyke P, Cheng R, McCreedy E, McAuliffe M, Khosravan N, Bagci U, Wood B.  “Eye Tracking System for Prostate Cancer Diagnosis Using Multi-Parametric MRI”, 25th Annual Conference on ISMRM, Honolulu, Hawai’i, USA, 2017.

36- Eranki A, Farr N, Partanen A,   Sharma KV, Kim A, Oetgen M, Celik H, Woods D, Yarmolenko P, Kim P, Wood B. “Tissue Fractionation using Microsecond-Long HIFU Pulses on a Clinical MR-HIFU System” Proceedings of Society for Thermal Medicine, 2017.

35- Sharma K, Yarmolenko P, Celik H, Avinash E, Kim A, Oetgen M, Partanen A, Smitthimedhin A, Patel J, Kim P “Changing Paradigm for Treatment of Osteoid Osteoma in Children”. SIR 2017, March 4-9, Washington DC

34- Celik H, Wakim P, Karanian J, Pritchard W, Castro M, Leonard S, Wood B. “RFA plus Lyso Thermosensitive Liposomal Doxorubicin Improves Survival Using Metric of RFA Duration per Tumor Volume: Retrospective Analysis of Prospective Randomized Controlled Trial”. RSNA 2016, Nov 27- Dec 2, Chicago, IL

33-Bing C, Staruch R, Yarmolenko P, Celik H, Nofiele J, Szczepanski D, Kim P, Kim H, Lewis M, Chopra M “Non-invasive growth plate ablation treatment in rodent models using MR-guided High-Intensity Focused Ultrasound”. Focused Ultrasound Foundation 5th International Symposium, Aug 28- Sept 1, 2016 in Washington DC

32- Yarmolenko P, Partanen A, Celik H, Eranki A, Beskin V, Santos D, Patel J, Oetgen M, Kim A, Kim P, Sharma K “Technical aspects, feasibility, safety, and initial efficacy of osteoid osteoma ablation with MR-guided High Intensity Focused Ultrasound”. Focused Ultrasound Foundation 5th International Symposium, Aug 28- Sept 1, 2016 in Washington DC

31- Castro M, Leonard S, Celik H, Wakim P, Karanian J, Pritchard W, Borys N, Lencioni R, O’Neal M, Tak W, Bradford JW. “Do geometric features of hepatocellular carcinomas correlate with survival following radiofrequency ablation (RFA) with and without lyso-thermosensitive liposomal doxorubicin (LTLD/Thermodox)?” SIR 2016, Vancouver.

30- Kim A, Sharma KV, Yarmolenko P, Celik H, Kaplan R, Dome JS, Mahoney A, Partanen A, Warner L,  Kim P. Safety and Feasibility of Magnetic Resonance-Guided High Intensity Focused Ultrasound (MR-HIFU) for the Ablation of Relapsed Or Refractory Pediatric Solid Tumors. ASCO, 2016, Chicago, IL, USA

29- Krahn P, Celik H, Ramanan V, Barry J, and Wright GA, “Multi-Contrast Late Enhancement Out-Performs Conventional Late Gadolinium Enhancement for Myocardial RFA Lesion Characterization”. In: Proceedings of the 24th Annual Meeting of ISMRM, Singapore, 2016 (Abstract 3597)

28- Eranki A, Farr N, Partanen A,  Yarmolenko P, Negussie A, Sharma KV, Celik H, Wood B, Kim P. “Volumetric and Thermal Characterization of Boiling Histotripsy Lesions Based on a Clinical MR-HIFU System” International Symposium of Therapeutic Ultrasound 2016.

27- Kinnard D, Wackerle D, Yang D, Oetgen M, Eranki A, Kim A, Sharma KV, Kim P, Yarmolenko P, Celik H. “Treatment Planning and Patient Positioning for MR-guided High Intensity Focused Ultrasound Treatment: A Systematic Approach”. Focused Ultrasound Foundation 4th International Symposium, pp.191, October 12-16, 2014 in Washington DC

26- Wackerle D, Celik H, Kinnard D, Yang D, Eranki A, Oetgen M, Kim A, Sharma KV, Kim P, Yarmolenko P. “The Optimization of Treatment Planning and Ablation Rate Improvements on Feasibility of Pediatric MR-HIFU Applications”. Focused Ultrasound Foundation 4th International Symposium, pp.205, October 12- 16, 2014 in Washington DC

25- Yang D., Celik H., Wackerle D.,Kinnard D., Eranki A., Oetgen M., Kim A., Sharma K.V., Kim P., Yarmolenko P. “Optical Measurement of Skin Temperature in MR-HIFU”. Focused Ultrasound Foundation 4th International Symposium, 209, October 12-16, 2014 in Washington DC

24- Sharma KV, Yarmolenko P, Celik H, Oetgen M, Kim A., Kim P. MR-HIFU: Applications in Pediatric Oncology and Surgery. Poster at the 57th Annual Meeting of the Society for Pediatric Radiology, May 14-17, 2014 in Washington, DC

23- Sharma KV, Yarmolenko P, Celik H, Wood B, Sze R. MR-HIFU: A Primer for Pediatric Radiologists. Poster at the 57th Annual Meeting of the Society for Pediatric Radiology, May 14-17, 2014 in Washington, DC

22- Celik H, Ramanan V, Barry J, Ghate S, Leber V, Oduneye S, Ghugre N, Crystal E, and Wright GA, “Radiofrequency Ablation Characterization: Comparison of Multi-Contrast Late Enhancement and Late Gadolinium Enhancement Sequences”. In: Proceedings of the 21th Annual Meeting of ISMRM, Utah, USA, 2013 (Abstract 4518)

21- Celik H, Ramanan V, Barry J, Ghate S, Leber V, Oduneye S, Ghugre N, Crystal E, and Wright GA, “Evaluating the extent of Acute Radiofrequency Ablation Lesions in the Heart Using an Inversion Recovery SSFP Sequence”. In: Proceedings of the SCMR 16th Annual Scientific Sessions, San Francisco, CA, USA, 2013 (Abstract O17) Finalist in Early Career Award

20- Ramanan V, Celik H, Barry J, Ghate S, Leber V, Oduneye S, Ghugre N, Stainsby J, Sethi B, Crystal E, and Wright GA, “Exploring intrinsic MR signal relaxation in acute RF ablation lesions using T2 mapping and IR-SSFP CINE imaging “. In: Proceedings of the SCMR 16th Annual Scientific Sessions, San Francisco, CA, USA, 2013 (Abstract O87)

19- Celik H, Mahcicek, ID, Atalar E, “Tracking Rotational Orientation of Catheter Using Transmit Array System”. In: Proceedings of the 19th Annual Meeting of ISMRM, Montreal, Canada, 2011 (Abstract 3757)

18- Celik H, Mahcicek I, Atalar E. “TrueFISP based Catheter Tracking Using a Transmit Array System”.8th Interventional MRI Symposium. Leipzig, Germany; 2010.

17- Celik H, Mahcicek, ID, Atalar E, ” Catheter Tracking Using Transmit Array System”. In: Proceedings of the 18th Annual Meeting of ISMRM, Stockholm, Sweden, 2010 (Abstract 291)

16- Celik H, Gulnerman MD, Akin B, Atalar E, ” Inductively Coupled Birdcage Coil”. In: Proceedings of the 18th Annual Meeting of ISMRM, Stockholm, Sweden, 2010 (Abstract 3901)

15- Celik H, Sengezer N, Akin B, Gulnerman MD, Insal BC, Kesre C, Atalar E, ” Safe Deep Brain Stimulator MR Imaging Experiments Using Fiber Optic Current Monitoring Feedback System”. In: Proceedings of the 18th Annual Meeting of ISMRM, Stockholm, Sweden, 2010 (Abstract 3897)

14- Celik H, Acikel V, Atalar E, RF Safe DBS Electrode Experiment: Using Floating Current Trap, MR Safety Workshop 2008, Lisbon, Portugal.

13- Celik H, Acikel V, Atalar E, Fiber Optic Based Safe Deep-Brain Stimulation Setup for a fMRI Study, In Proceedings of the 25rd Annual Meeting of ESMRMB Valencia 2008 (Abstract 346).

12- Celik H, Uluturk A, Tali T, Atalar E, Ters Kutuplasma Yontemiyle Kateter Izlenmesi, 3. TMRD Kongresi, Ankara, Turkiye.

11- Celik H, Atalar E, Ters Kutuplasma Yontemiyle Kateter Izlenmesi: Fazli Duzenlenmis Sargi Calismasi, 13.BIYOMUT, Ankara, Turkiye.

10- Celik H, Guttman MA, Kocaturk O, Saikus C, Ratnayak K, Faranesh A, Derbyshire A, Lederman R, Atalar E, “Reverse Polarization Method for Catheter Tracking: Phased Array Coil Studies and Real-Time TSENSE Implementations”. In: Proceedings of the 16th Annual Meeting of ISMRM, Toronto, Canada, 2008 (Abstract 1204)

9- Celik H, Uluturk A, Eryaman Y, Tali T, Atalar E, “A Novel Catheter Tracking Method Using Reversed Polarization” In: Proceedings of the 14th Annual Meeting of ISMRM, Seattle 2006.(Abstract 264)

8- Celik H, Quick HH, Atalar E, “Wireless Active Catheter Tracking Method Using Reversed Polarization of Phased Array Coils for MR-guided Interventions”. IMRI Leipzig 2006.

7- Celik H, Quick HH, Zenge MO, Atalar E, “Wireless Active Catheter Tracking Method Using Reversed Polarization: Implementation of 12-Channels Phased Array Coil” In: Proceedings of the 23rd Annual Meeting of ESMRMB Warsaw 2006 (Abstract 258).

6- Celik H, Quick HH, Zenge MO, Atalar E, “Implementation of Wireless Active Catheter Tracking Method Using Reversed Polarization to the Phased Array Coils”. MRA Club Basel 2006.

5- Celik H, Eryaman Y, Altintas A, Erturk VB, Atalar E, “Microstrip Based MR Birdcage Coil for 1.5 T”. APS-URSI Washington 2005.

4- Eryaman Y, Celik H, Altintas A, Atalar E, “Novel Strip-Conductor Internal MRI Coils”. APS-URSI Washington 2005.

3- Celik H, Atalar E, “A Novel Catheter Tracking Method Using Reversed Polarization”. ESMRMB Basel 2005.

2- Eryaman Y, Celik H, Altintas A, Hafez IA, Atalar E, “Dahili Bobinlerin En Iyi Icsel Sinyal/Gurultu Orani Kullanilarak Degerlendirilmesi” . URSI Bilkent 2004.

1- Eryaman Y, Celik H, Altintas A, Hafez IA, Atalar E, “Evaluation of Internal Coils Using Ultimate Intrinsic SNR” In: Proceedings of the 11th Annual Meeting of ISMRM, Toronto, Canada, 2003 (Abstract 2400)